PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KXZ41805.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Gonium
Family C3H
Protein Properties Length: 451aa    MW: 46506.7 Da    PI: 8.589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KXZ41805.1genomeGPGRPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-063251626
                -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                C +f + G C++Gd+Ck++H+
  KXZ41805.1 32 CFDFTK-GVCSRGDKCKYSHD 51
                667888.*************7 PP

2zf-CCCH20.49.1e-07110131426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C +f + G C++G+ C+++H+
  KXZ41805.1 110 AICYDFVK-GVCQRGAECRYSHD 131
                 58******.*************7 PP

3zf-CCCH23.88e-08150171426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 e C +++r G C++G++Ck++H 
  KXZ41805.1 150 EVCYDYLR-GRCNRGATCKYSHN 171
                 78******.*************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.5352653IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-52652IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-52751IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-52851IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1036087IPR000571Zinc finger, CCCH-type
SMARTSM003560.286186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.79E-5107131IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4107132IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4110131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558146173IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4147172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5147171IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5150171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4150172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDTYPGGVAP RPGQNDAARQ ASIAQEGKAQ ICFDFTKGVC SRGDKCKYSH DLATIVHFNS  60
KEKGICFDYL RNQCHRGLLC RFSHDLSNIA QQCQVYNNGS KENKGTKPNA ICYDFVKGVC  120
QRGAECRYSH DLSLIARMAR GGSAQPKAGE VCYDYLRGRC NRGATCKYSH NIAFLAAPGF  180
LGSAMNSDGT PMAAQAPGAG MPGAAGPLGG MPLGAAPGFM GMGGLQSMNP RLAPALSADQ  240
ATLNHVLAAA GPGAVNQMLA AQAAMQQSSG LAEAAAAAAE GRRRSASLTG ELVNDTLLVN  300
DQPSSNWQGV SGGQAKALAV AQQAALMQNY AAQQRMARAA AANMHAFGPM AQMQGPGHGP  360
DATGAEGLMN QAAGGMNPGL FGKHPGMGQF NGLPDTGARG MGRPPLPPGA MPMELASFLS  420
GGLAENPIFA ETLAAAAKAQ AQAQSQVPYM A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002946451.10.0hypothetical protein VOLCADRAFT_86752, partial
TrEMBLA0A150FX700.0A0A150FX70_GONPE; Uncharacterized protein
STRINGEDO973241e-132(Chlamydomonas reinhardtii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.14e-06C3H family protein